Transcriptional response

Meta Information :

Response ID	Perturbagen	Data accession	Cell Source	Species	Duration	Concentration	Expression ID
RID57169	Trichostatin-a	GSE92742	SKB	Human	24h	10uM	EID0304

Response Information :

Types	Number	Response transcription factors
Up-regulation	378	GTF2A2; NFE2L2; SMARCA5; RUVBL1; TFAP2A; TADA3; DRAP1; CTR9; DNMT1; ATF6; CREB3; ENY2; RHOA; SIX2; RBBP8; ARNT2; HLTF; RFXANK; GMNN; TFDP1; NFIL3; TAF6; PARP1; SMARCD3; FOXK2; SSRP1; MEN1; NOC2L; XRCC6; JUN; SREBF1; DEK; TRIM16; MLX; HDAC5; TCEB2; DPF2; BRD7; ILF2; SETD3; HDAC1; MYCBP; SMARCA1; ARID1A; PFDN5; RBFOX2; CBFB; ITGB3BP; MITF; RUVBL2; ZNF692; RELA; GTF2A1; SREBF2; TCF25; BAZ1B; CDC5L; ZNF593; MYC; PA2G4; YEATS2; SP3; ZFHX4; LZTR1; HMG20B; CCNH; ZHX3; SP100; UBE2L3; MTDH; MYRF; TRIM28; USP21; SMARCC1; MDFI; HOXA11; KAT5; SUPT4H1; TBL1X; WIZ; FOXO3; HIPK2; LDB1; RXRB; SMARCB1; ETV5; MNT; GTF2F1; PRKDC; PPARD; MED24; AIP; SUB1; NFIX; HIF1A; RNF10; PIAS3; HDAC9; PSMD9; YBX1; TULP3; HOXB3; EHMT2; MMS19; KAT2A; COPS5; TSG101; PMF1; PCGF1; CITED1; RNF141; BRF2; CCNE1; PDLIM1; RERE; SND1; SIN3B; ZNF580; NELFB; MDM2; SNAI2; SOX4; CBX6; ZNF415; RBPJ; PRPF6; HMGB1; VPS72; TAF10; TSC22D3; MED16; DNAJC2; MAGED1; PEX14; THRAP3; KDM5D; PEG3; JUND; PCBD1; EDF1; APEX1; MED23; HDGF; NCOA3; MED15; SOX2; PBX1; AES; VEZF1; SUMO1; GLI3; PSMC3; THRA; ZFP36L1; BACH2; MED20; ZNF133; TGFB1; SUPT6H; GTF2IRD1; PCGF2; NSD1; ARHGAP35; PKNOX2; THAP7; AR; FOXD1; CLOCK; ERCC3; NEDD8; HOXB6; ASXL1; ATF3; CHD8; TBPL1; SUZ12; MTF1; MSX1; RING1; HMGXB4; SAFB; RBBP7; NKRF; DLX5; ACTL6B; ENO1; COPS2; NFIC; MBD2; RYBP; RUNX3; CRK; TCERG1; CBX3; TRRAP; CHD4; ELK1; HDAC2; ZNF816; LOXL2; E2F6; SSBP3; SOX9; CARM1; SOX12; NAB1; HDAC3; TULP4; HDAC6; CXXC1; TERF2; TWIST1; STAT1; TEAD1; ECD; ATF2; PREB; RFC1; ZNF331; TAF12; RBM39; CERS6; CTBP1; NUP62; ZBTB17; HOXB2; GATAD2A; DMTF1; CIZ1; CBX5; CALR; SMARCD2; PSIP1; ZBTB18; AATF; PTTG1; ERCC2; URI1; CEBPB; MAFG; SMARCE1; ESR1; MED13; MEIS1; RAN; KLF11; ABT1; TLE1; BRD4; WDR77; NONO; DEAF1; ZNF587; CNOT2; INSR; RBBP4; SP110; NCOA6; ZNF83; HOXD1; TAF7; STAT3; SCMH1; PHF20; BTF3; CREG1; NR2F6; PITX1; HEY1; KAT8; MAZ; WWC1; TSC22D1; FHL2; TCF12; ETS1; YBX3; TRIP6; POLR2A; ISL1; USP22; CSDE1; C1QBP; TLE2; IRF7; FOSB; NAB2; CHD9; VDR; NR4A2; RNF4; ZNF528; TRAK1; MXD3; NKX3-1; CREB3L2; DDIT3; PHF1; ZIC1; UBE2I; BCL10; E2F3; EHF; ZNF611; CDIP1; AHR; YWHAB; TRIM22; SAFB2; MLXIP; SNIP1; ZKSCAN1; ZFPM2; ZNF544; ZNF512B; NFKBIA; RBL2; TAF1D; SMAD1; ZBTB11; SETD2; GMEB2; TCEA1; ID2; ZNF302; CREM; CDK8; IRF9; THAP11; CDK7; THAP4; ELF3; BIRC2; TRIM29; ASH2L; ZNF195; BNC2; PIR; PBX3; NPM1; USP16; PMS1; HMGN3; ZNF410; TBP; KLF7; EED; HOXB5; SLC2A4RG; MXI1; ZNF274; CNOT6; VGLL4; TRIM27; ACTL6A; ATF5; ZNF160; TOB1; BCL6; NFE2L1; HBP1; LITAF; CREB3L1; CRYM; CDK2; ZBTB38; IFI16; SCAND1; TRIB3; SALL2; HOXA5; MAF; BANP; FLNA; MEIS2; CITED2; EMX2; HTATIP2
Down-regulation	466	ZNF180; GATA6; ZNF227; ZNF112; BRWD1; ZNF764; UBE3A; ZNF257; ZEB2; HOXC4; LHX6; OVOL1; ZNF493; ZNF510; ZNF254; ZSCAN16; GATA3; ZNF124; NRBF2; IKZF1; WWP1; HOXA1; PRDM1; ZNF236; CSDC2; ETS2; BATF; LHX1; BRCA2; LHX3; SOX21; ZNF7; ZNF682; BACH1; EGR2; SOX3; ZNF85; FHL5; ZNF350; NANOG; ERG; ARNTL2; MYB; ZNF234; NR5A2; ZNF506; ZNF222; PRDM14; ZNF589; NKX2-1; THAP9; ZNF710; ZBTB3; ARID3B; ZNF33B; HLF; ELF5; RXRG; ZSCAN2; SSX3; ZNF711; FOXH1; ZNF770; FOXE1; ING1; ZFX; EN2; IRX5; ZNF10; E2F2; ZBTB6; ARRB1; ZNF551; SPIB; BAZ2B; SOX18; TFAP2B; NFX1; FOXJ3; NR3C1; ZNF267; KLF2; ID4; ZNF573; MNAT1; ZNF586; BCL11B; MYCL; PRDM13; ING3; RREB1; SUV39H1; TFCP2L1; ZNF93; TAF1A; MLLT10; ZNF134; ZNF223; HOXC5; ZNF423; PSPC1; NEUROG3; ZNF140; HOXD13; ZNF623; PITX3; ZNF225; LIMD1; ZNF235; IRF5; PPARG; SPI1; ZNF208; TAL1; ZNF45; BRIP1; TLX3; ZNF571; ATOH1; RFX7; PLAG1; NR5A1; ZNF556; SKI; ZNF696; MAK; IKZF3; MYF6; ZNF695; ZNF22; ZFP2; YAF2; NR1D2; GRHL2; POU2F3; TOPORS; WDHD1; STAT5A; ETV3; FOXJ1; ZNF189; NR3C2; ZFP36L2; PAX7; HESX1; ZNF557; ZNF75D; SRF; IKZF4; ZNF292; PRDM10; NCOA1; KLF10; HDAC11; ZNF34; ZNF442; ZNF219; ZBTB44; ZNF813; ZNF614; ZNF157; LIN28A; ZBTB43; DOT1L; GSC2; TGIF2; MEOX2; ZNF84; KDM5C; TFEB; DNMT3B; NEUROD1; FEV; ZNF674; GFI1; TFDP2; TXNIP; TFDP3; KDM5A; AGO2; GABPA; FOXN3; ZNF324B; MAPK8IP1; NHLH1; ZNF16; LMCD1; MYT1L; PAWR; FOXJ2; IKZF5; ESRRB; ZNF550; DCC; ELF2; ZNF343; ZNF391; EP300; LYL1; ERF; PITX2; FOXD3; MAP3K10; ETV6; LMX1B; SSX1; ZNF107; SUV39H2; FOXI1; HOXC8; SRY; GATA4; MED14; NEUROD2; ZNF253; CHD2; SOHLH2; KLF6; EMX1; DACH1; HOXB8; POU6F1; TRIM24; ZNF41; NKX2-8; HNF4A; GATA1; TEF; ZNF273; SMAD6; ZNF200; GCM2; GATA2; ZNF43; RBL1; ZNF675; ZFP69B; POU1F1; CIITA; CBL; JAK2; ZNF362; NFATC1; TBX2; SCAI; VHL; RFX2; E2F8; TCF15; MTF2; SIX6; ZNF430; VGLL1; HNF4G; ZNF304; SOX13; TDRD3; POU3F3; SMAD3; SIM1; HSF1; ASCL2; RFX1; TCF7; SHOX; ELF1; HOXD12; CD3D; HEY2; CEBPD; NCOA2; HOXA3; ZNF446; TBR1; BCOR; KAT6B; MAFF; CRTC1; ZNF613; BLZF1; ZNF250; PPP1R13L; SUPT3H; LHX2; KLF1; CDX1; POU4F1; NFYB; ZNF184; TMF1; HR; NKX2-5; ZNF81; SKIL; CBX2; GMEB1; PRDM5; SAP18; HNF1A; MXD1; ZNF8; SNAPC4; NR1I2; BLM; ZBTB25; MAFB; KMT2D; CUX2; BPTF; ZNF529; EGR4; DBP; ZNF226; SNAI1; TOX3; ORC2; OLIG2; ZNF263; TCF7L2; REL; PROX1; SMAD5; KLF15; FLI1; SATB1; ZNF440; RELB; DYRK1B; STAT5B; CCNA2; ZNF473; PAX6; ZNF345; ZHX2; KLF4; STAT4; EGR3; CBFA2T3; SATB2; ZNF443; MSC; POU5F1B; CHAF1B; JUP; ZNF174; HIC1; PPARGC1A; ZNF239; ZNF202; NKX2-2; AIRE; CIR1; HDAC4; TBX21; ZKSCAN3; CAPN15; BNC1; MDM4; TAF9B; PML; IRF6; SCRT1; KDM4A; DAXX; CDX2; CREBZF; NRL; HOXC10; SMAD7; DNAJC1; POU2AF1; ZNF492; ZFP30; THAP10; ZNF426; PATZ1; KLF5; ZBTB14; YEATS4; ATF1; KLF3; IRF4; RCOR3; ZNF91; CARHSP1; MEF2A; CBX7; MYCN; MEF2C; ZNF787; MED17; TP63; RORA; NFE2; ELF4; JUNB; ZNF468; ZMYND11; PIAS1; TRIM33; ASCL1; ZNF175; GCFC2; PSMC3IP; FOXA2; TCF21; CHD7; BASP1; CARF; CHD1; ARID4A; POU2F1; BCL11A; CEBPA; CREB1; AFF2; GFI1B; DDX54; INSM1; ZNF671; TFEC; ZNF536; FOSL1; TOX; EGR1; ZSCAN31; RLF; BARX1; ZNF217; HIVEP1; ZBTB20; GLI2; PHIP; HOXC6; PRRX1; ZNF177; MYBL1; HIPK1; SOX11; SFPQ; ALX1; BTG1; ZBED4; ZNF264; AEBP1; BHLHE41; AFF1; TERF1; PTRF; PAX5; CAMTA1; ZBTB16; TBX3; NR2F1; KLF13; BRCA1; HIPK3; STAT6; ANKRD1; HIC2; HCFC2; NFIB; KLF9; MTA1; CREB5; FOXF2