Transcriptional response

Response ID Perturbagen Data accession Cell Source Species Duration Concentration Expression ID
RID29823 Cgp-60474 GSE70138 NPC.CAS9 Human 24h 0.37uM EID0129
Types Number Response transcription factors
Up-regulation 506 FOS; EGR1; NFATC4; NFKB2; CEBPB; TULP1; ESRRA; ZNF154; CBX4; RFX1; ZKSCAN4; KDM5A; IRF6; CAMTA2; REL; MEF2C; ELF4; CHD2; ZNF33B; EMX1; MAFK; PRDM14; TP73; MAML3; ALX4; SPI1; EZH1; ETV3; ZNF215; AIRE; NEUROG2; ZXDC; TFDP2; NEUROD4; THRB; ZNF345; ZNF771; POU6F2; PAX1; MLLT1; TEF; PROP1; HNF1A; DLX4; NEUROD6; PAX3; CDIP1; HNF1B; LZTR1; VGLL1; PAX2; CDX4; ZFHX2; FOXA2; ZSCAN2; HNF4A; HOXB8; TLX2; HOXB1; PRDM12; POU3F3; EYA3; NPAS1; FOXB1; RARG; ZNF816; VENTX; LHX3; NEUROD2; TONSL; DOT1L; SCRT1; TAF6L; RBPJL; PRDM9; KLF15; ERBB4; ZNF75D; ZNF155; TBX1; LMX1B; PRDM16; CRX; TBX5; FOXH1; ZNF343; HOXA3; PITX3; CALCOCO1; TSC22D3; ZNF549; MECOM; ZNF362; HOXC5; NKX6-1; ATF6B; SKI; ETV2; TULP3; HSF4; VPS72; SOX14; RFX3; HOXD12; GBX1; HOXA6; PAX7; ZNF550; SNAPC4; TBX6; HIPK2; ZNF500; TBR1; HDAC5; PHOX2A; TWIST1; ATOH1; FOXF2; BNC1; ZKSCAN3; ASCL3; CDX1; TTF2; ZNF682; RORC; ZNF224; HNF4G; TFAP2A; FOXE3; TULP2; ZNF701; CBX2; PDX1; NR6A1; ZNF768; NEUROG1; MAP3K10; NFKBIB; ZNF394; ZNF225; SOX21; NRL; HES2; AFF3; HEYL; ZNF221; IFNB1; ZNF331; ZNF471; ZNF444; NEUROG3; GMEB2; KLF13; POU2F3; ZNF778; SHOX; RFX2; HOXC8; DAXX; FEZF2; NR5A1; CCNH; ZKSCAN8; ZNF440; FOXC2; IRF9; PPARA; ESRRB; WWC1; NHLH1; HBP1; TAF4B; TFDP3; ETV6; RAX; FOSB; THRA; GRIP1; FOXD3; SIM1; DLX6; E2F4; HOXD3; DYRK1B; ZNF74; BAZ2A; TGFB1; SKIL; LBX1; ETS1; SOX1; ZBTB16; ZBTB7B; DLX5; E4F1; SRCAP; SRY; KMT2D; ACTL6B; MBD4; GSC2; HDAC11; NR5A2; CEBPE; ZNF391; HMGA1; HIRA; SNAI2; HOXB13; ZNF814; ZNF507; ZNF34; HAND2; HOXD1; FOXL1; ZNF41; POU4F3; ALX3; PDLIM1; MXD4; SNAI1; SUPT3H; IKZF3; PPARD; ZNF81; NR4A2; CARF; ARID3A; ZNF749; TLX3; MECP2; MYNN; WHSC1L1; ING4; NR4A1; TFCP2L1; MYBBP1A; SOX18; TBX4; BARX1; OVOL1; HESX1; PML; HIVEP3; ZNF407; NR2C2; IKZF1; ONECUT1; CBX7; SOX5; SUPT5H; MAFF; ZBTB7C; ZBTB44; LITAF; DCC; NKX2-5; KLF8; MYT1; NR0B2; MSX2; GCM2; TGIF2; PRDM2; FOXN1; HIF3A; EPAS1; ATN1; SSX7; TSHZ2; ASCL2; ZNF350; ZNF408; NACA2; TAF1C; EVX1; GBX2; TBX19; ZNF695; CREG1; ZBTB48; ATF3; TRIM25; ZNF80; SP140; TLE2; TBX10; ZNF780B; VDR; ZNF195; ZNF257; ZNF276; POU1F1; POU3F4; MED15; MDM4; ARNT2; CCNT1; HMGXB3; ZNF157; PCGF1; PBX2; VHL; MED25; CIITA; ARID5A; BCL11A; BRDT; MAK; ZNF239; ZIM2; ZNF674; NKRF; PAX4; MEIS2; NR1H4; SP100; STAT6; HIC1; ZNF133; SETDB1; HSF1; KLF7; HLX; ONECUT2; CBFA2T3; MYBL1; ZIC3; HOXC4; WNT4; KAT2A; TCF7; UTF1; CREB3L2; SOX17; HOXA5; ZNF354A; CIR1; CDX2; NR0B1; AHR; MZF1; OVOL2; SUPT6H; TRIB3; NR4A3; SREBF2; STAT2; KDM5C; THAP7; TFEB; HOXB5; FLI1; JUN; FOXI1; POU2F2; SPDEF; ZNF611; ZNF141; ZNF675; KLF3; L3MBTL1; IRF3; ZNF623; ZNF787; ZEB1; SCAI; CSDE1; PHOX2B; GATA1; HOXD9; PRDM1; CNOT3; ZNF512B; ZNF557; NPAS2; PAX6; KLF9; MYRF; CREM; ZHX2; HOXA4; HDAC9; ZNF589; STAT5A; HIVEP1; MDM2; CAPN15; SSBP3; CRYM; FOXJ2; POU5F1B; CBX6; ZNF467; PRMT2; GRHL2; CREB5; ZNF423; MYC; TFEC; HMBOX1; ZNF665; GCFC2; BHLHE41; ST18; SOX3; ZNF536; PBXIP1; ZNF205; AR; CAMTA1; ZNF165; GFI1B; ZNF264; NFAT5; WT1; SOX13; ZNF117; SMAD7; PHF1; NEUROD1; GFI1; MXI1; NFE2L3; SMARCC2; RXRG; SOX10; LHX6; ZNF83; CD3D; ARID5B; ARID3B; ZNF131; NCOA3; NCOA2; TBX21; SP140L; ZNF652; ZNF544; JUNB; HIC2; EN1; TDP2; TRIM22; KDM4C; IRX4; ZNF93; IRF1; CCNE1; HTATIP2; TCEA2; EHF; ZBTB20; KLF4; CDK9; LOXL2; WWTR1; BCL6; HAND1; ID1; SMARCB1; TFAP2C; LIN28A; ZFPM2; STAT4; GATA2; KAT6B; JUP; OSR2; EMX2; HOXB6; PRRX1; FOXN3; KLF6; ZNF580; LYL1; AES; SPIB; ESR1; NFE2L2; IRF8; ZNF91; KAT2B; MAFB; CALR; RUNX3; SHOX2; NFE2; HOXA11; PTRF; SLC2A4RG; IRF7; BRD4; TP63; ELF5; CEBPD; FOXC1; IFI16; INSR; ZBED2; ATF5; HOXB2; HHEX; TBX2; MSX1; E2F2
Down-regulation 212 HDAC2; SOX4; GTF2A2; THAP11; USP22; EZH2; HNRNPD; ATF1; CRK; SOX2; RHOA; TCERG1; RBBP4; BCLAF1; CDK7; SMARCC1; ECD; CCNA2; TP53; PATZ1; CREB1; NONO; MAGED1; HMGA2; RBM14; DDX5; TBP; SNW1; SMARCA5; SCAND1; BRD8; PSPC1; APEX1; KAT7; NELFB; AATF; SFPQ; HSF2; SAP30; ING2; NUP62; ZBTB11; RUVBL2; UBE2I; NEDD8; SSBP2; ETV1; BRCA1; BMI1; RBBP7; E2F6; NCOA6; TADA3; NPM1; HMGB3; TAF7; NR2F2; HSBP1; MED4; NAB1; ZMYND11; BRD3; EDF1; KDM5D; DPF2; VEZF1; YBX1; ASCL1; RLF; SSRP1; ZNF146; PTTG1; TRIM28; RAN; EED; HMGB2; CENPF; TSC22D2; SMARCE1; ING3; CTCF; ADNP; BAZ1B; TRIM32; TCF12; NKX3-1; ITGB3BP; ZNF226; THAP1; KAT6A; MED6; MED7; PIAS2; RNF138; CNOT1; ZNF292; SP3; WDHD1; TBPL1; MAML1; ENO1; SIAH2; DEK; MED27; ZNF189; ZFP64; NCOA1; ZNF302; ZNF274; HES1; KAT5; CTR9; ARID4A; TOX3; JARID2; PCGF2; TBL1X; CBX3; POLR2A; ZBED1; CRY1; BATF; SIX1; SF1; ZNF443; PBX1; NRBF2; XBP1; HDAC1; MYB; DR1; BIRC2; TAF5; PLAGL2; PIAS3; PSMC3IP; TRRAP; PBRM1; SMAD4; MNAT1; YWHAB; MLX; MED1; UBP1; DDX17; ERBB2; PHF2; ZKSCAN7; VGLL4; ZBTB1; BATF3; CBFB; ZMYM2; ZNF410; C1QBP; AFF1; MAF; MED17; MAZ; PIR; NFYC; HMGB1; FOXA1; URI1; TCEB2; TSC22D1; SOX11; HOXC6; BCOR; ASH2L; NCOA4; BAZ1A; RCOR1; CARM1; PUF60; NRIP1; NFE2L1; CARHSP1; MGA; ID4; CHD7; CITED1; BASP1; PITX2; ILF2; TAF9; MYCN; IRX5; XRCC6; SIX2; ZEB2; IKBKAP; DNMT3B; FOXG1; FOXD1; SAP18; TCFL5; SUB1; SPEN; PRKDC; TRIM16; ZBTB18; SMARCD3; SUV39H1; RUNX1; NR2F1; EYA2; HOXC10; TLE1; FLNA; PBX3; PEG3