Transcriptional response

Response ID Perturbagen Data accession Cell Source Species Duration Concentration Expression ID
RID29371 Cgp-60474 GSE70138 NPC.CAS9 Human 24h 0.12uM EID0127
Types Number Response transcription factors
Up-regulation 373 EGR1; NFATC4; THRB; MEF2C; PROP1; NEUROG1; NFKB2; RFX1; HOXA4; CBX7; TULP1; EMX1; ZNF771; HOXC5; TBX10; EPAS1; HOXA3; EMX2; CRX; HOXA6; ASCL3; RBPJL; TBR1; LZTR1; TCF7; NEUROD2; IRF6; HOXA5; HNF4G; VENTX; GBX1; ZNF816; CD3D; MYRF; ATOH1; HOXB1; ZNF154; PDX1; TP73; MECOM; ALX4; PRDM12; CAMTA2; RORC; AIRE; TEF; MAML3; ACTL6B; E2F4; SSX7; HEYL; FOSL1; CDX1; HNF1A; ZFHX2; HNF4A; NEUROD4; SOX17; ZNF215; CBFA2T3; TBX1; NRL; NR1H4; HIPK2; MAK; SRCAP; ZXDC; DOT1L; ZNF335; HSF4; ZNF264; NR0B2; CEBPE; FOXC2; HSF1; MLLT1; ZSCAN2; ATF3; TLX2; HMGXB3; TAF6L; PAX3; PRDM14; ZBTB48; OVOL1; FOXH1; ZNF343; THRA; SIM1; SCAI; NKX6-1; FOXL1; TFDP3; NOCT; SCRT1; ZNF224; ZIM2; ZFPM2; TAF1C; ALX3; EYA3; MAFK; CDIP1; ZNF345; LBX1; MAFF; FEZF2; ING4; PRDM9; TGFB1; SNAPC4; SOX1; FOXB1; PAX1; CDX4; CREBL2; FOXF2; NEUROD6; NPAS1; PITX3; NFE2L2; LHX3; TCEA2; CHD2; PRDM16; HOXD12; PHF1; POU6F2; MAP3K10; ZNF142; ZNF221; SOX14; HLX; RARG; TONSL; BNC1; CNOT3; ZNF507; ZNF512B; PPARA; ZNF611; SOX18; HOXC8; TULP2; DLX4; CIITA; POU3F3; VGLL1; NEUROG3; NEUROG2; FOXD3; VDR; FOXE3; PRDM2; KMT2D; ESRRB; REL; IKZF4; LMX1B; RFX2; ZKSCAN4; NKX2-5; MED15; SUPT5H; TBX5; ARHGAP35; ETV2; ZNF391; SPDEF; DCC; ZNF165; KLF15; PRRX1; CRYM; DLX6; ZNF75D; MKL1; NR5A1; AHR; CBX4; LHX6; ZNF665; ETV3; NEUROD1; RING1; WWC1; HOXC4; TULP3; RAX; ZNF440; TBX2; DRAP1; WNT4; CBX6; TFCP2L1; IRF1; HOXB8; ZNF688; PDLIM1; GSC2; ZNF536; UTF1; NFE2L3; TUB; IRF9; ESRRA; ZBTB7B; THAP7; IKZF1; SOX21; ST18; ETV6; MZF1; ESR1; POU4F3; PRDM10; SRY; HAND2; TSHZ2; ZNF749; MBD4; ATF6B; BARX1; HOXB5; HMGA1; HOXB2; HDAC9; HNF1B; PTRF; TTF2; POU2F3; ZNF354A; ZBTB7C; GBX2; PAX2; TRIB3; IRF8; SP140L; ZNF239; ATN1; ZBTB20; CEBPB; HIF3A; KAT6B; PRDM1; TFAP2C; TAF4B; SPI1; YBX3; CALR; SIX6; NR4A3; NFIX; IRF7; FHL2; BRDT; TFAP2A; E4F1; SNAI2; NR4A2; CRTC1; RXRG; ZNF557; NR5A2; PAX6; NR1I2; KLF6; ELF3; ZNF133; PHOX2A; NAB2; FOXA2; NOC2L; HDAC5; WT1; NR4A1; SUPT3H; ZNF331; BCL11A; BAZ2A; HOXA7; L3MBTL1; FOXI1; ZNF768; SP100; HOXD1; DYRK1B; GRHL2; FOSB; HOXD3; JUN; OSR2; ARID5A; DLX5; ZNF552; ZSCAN31; ZNF528; MNX1; PNRC1; CREB3; FLI1; MXD4; STAT4; AR; ELF4; ZNF350; GFI1; LYL1; BRD2; KLF4; SLC2A4RG; POU2AF1; TCF21; TFDP2; DBP; ZNF544; CCNH; CREG1; TFEC; AES; TWIST1; MYT1; GATA6; HOXB6; NR0B1; WWTR1; HHEX; ARNT2; TGIF2; TLE2; EN1; SP140; SOX13; ZEB1; MYBL1; ZNF467; RORA; BHLHE41; HIVEP1; ERBB4; DDIT3; TDP2; KLF13; LITAF; OVOL2; HIRA; INSM1; HOXB13; HLF; CREM; ZBED2; HOXA11; STAT6; NFE2; RUNX3; KLF2; KLF11; LOXL2; ZBTB16; ZNF91; MEIS2; TRIM22; CEBPD; AEBP1; EHF; MYC; JUP; ID1; HOXB7; GATA2; BTG1; E2F2; RELB
Down-regulation 225 PUF60; HDAC2; TLE1; SOX4; USP22; EZH2; CCNA2; RHOA; PATZ1; SPEN; TP53; TCERG1; NUP62; HMGA2; GTF2A2; GTF2IRD1; SMARCA5; SMARCE1; VGLL4; HSF2; CBX5; SOX2; RBM14; RBBP4; TRRAP; ASH2L; BRD3; MAGED1; SNW1; SMARCC1; ETV1; AATF; BRCA1; HNRNPD; BLM; BMI1; ATF1; ECD; BRD8; MED4; PMF1; UBE2I; NCOA6; SUB1; SSRP1; NCOA1; EED; PMS1; HSBP1; TRIM32; DPF2; ID4; BCLAF1; HMGB1; ARID4B; ZMYM2; PSPC1; BAZ1B; CHD7; KAT7; RFX5; SOX11; E2F6; PBRM1; SAP30; ZBTB1; ZMYND11; RLF; RNF111; ASCL1; HLTF; JARID2; NFYC; DDX17; VEZF1; ZNF146; CENPF; NPAT; ELF2; PCGF2; NAB1; ZNF84; CBFB; ADNP2; IRF4; PURA; ILF2; REST; USP21; SIX1; TBL1X; STAT5B; SUZ12; ZKSCAN7; NELFB; DNMT3B; ING2; SAP130; TOX3; RNF4; MYCN; ADNP; WDHD1; ZNF302; WHSC1; MED1; CTR9; CNOT1; DDX5; BAZ1A; HMG20A; SP3; CITED1; CTCF; PSMC3IP; ITGB3BP; SIX2; AFF1; RBPJ; E2F3; MLLT10; EYA1; SETD2; ZNF24; CRY1; UBP1; HMGB2; TBL1XR1; ATF7IP; PIAS3; PHF2; XBP1; KAT6A; SFPQ; RNF138; IRF2; ARID4A; BCOR; PBX1; SMAD2; LZTS1; ZNF281; TCF12; ZNF432; URI1; RAN; ZNF274; DR1; PIAS2; APEX1; SALL2; RYBP; ZNF443; PTTG1; SF1; ZNF189; NEDD8; TCF7L1; MLX; SMAD4; HES1; FOXO3; ENO1; ING3; BATF3; NCOR1; TADA3; DEK; TBPL1; ERBB2; NCOR2; RERE; CBX3; POLR2A; BATF; CDK8; MYCL; MYB; ELF5; THAP11; ZEB2; REPIN1; TULP4; BAZ2B; HMGB3; TAF7; NLK; ZNF516; ISL1; ZNF107; ZBED1; ZBTB18; HMGN3; FOXC1; CREB1; EDF1; BRIP1; TCFL5; NCOA4; NR2F1; MEOX1; TRIM29; ID2; PLAGL2; TLE4; SUV39H1; ZNF22; HMBOX1; NR2F2; PBX3; TFAM; SIAH2; SMARCD3; KDM5D; NKX3-1; NRIP1; ZNF532; IKBKAP; MTF2; NFIB; POU4F1; HOXC6; BASP1; HEY1; SSBP2