Transcriptional response

Meta Information :

Response ID	Perturbagen	Data accession	Cell Source	Species	Duration	Concentration	Expression ID
RID04530	Tnfa	GSE9055	Umbilical vein cells	Human	5.5h	10ng/ml	EID4890

Response Information :

Types	Number	Response transcription factors
Up-regulation	351	ACTL6B; AFF3; ALX4; ARID3A; ARID4B; ARID5B; ARL2BP; ARNT; ARNT2; ARNTL2; ASCL1; ATF3; ATF5; ATF6; ATOH1; BARX1; BASP1; BATF2; BATF3; BAZ2A; BCL9L; BHLHE22; BHLHE40; BHLHE41; BRD4; CASZ1; CCNC; CDK2; CDYL; CEBPD; CECR2; CENPF; CERS3; CITED4; CREB3; CREB3L1; CREB3L2; CRX; CRYM; CTCFL; CTNNB1; DCC; DLX2; DLX5; DMBX1; DMRT2; DMRT3; DMRTC2; DR1; E2F2; E2F5; EBF2; EHF; ELK1; EN2; ENO1; ESRRB; ETS1; ETV3; EVX1; EYA1; EYA2; FERD3L; FIZ1; FOXA2; FOXA3; FOXD3; FOXE1; FOXF1; FOXH1; FOXJ3; FOXN1; FOXR2; GABPB1; GATA4; GATAD2A; GBX2; GLI1; GLI2; GMEB1; GRHL3; GRIP1; GTF2A1L; HAND2; HBP1; HDAC10; HDAC4; HDAC9; HDGF; HDX; HELZ2; HES5; HEY1; HEYL; HIPK2; HIVEP2; HMGB4; HMX2; HNF1B; HNF4A; HNRNPD; HOXA13; HOXB13; HOXB3; HOXC12; HOXC9; HOXD1; HOXD10; HOXD9; HR; ID4; ING5; IRF1; IRF2; IRF5; IRF8; IRF9; IRX3; IRX5; ISL1; JUNB; KCNIP3; KCTD1; KDM1B; KDM5A; KLF13; KLF17; KLF3; KLF6; KLF7; KLF9; L3MBTL4; LEF1; LHX1; LIMD1; LITAF; LMX1A; MAEL; MAF; MAPK8IP1; MBD1; MEOX1; MEOX2; MITF; MKL1; MKX; MNDA; MSC; MSX1; MYC; MYCL; MYOG; MYRF; MYT1; NACA2; NCOA3; NCOA7; NEUROD4; NEUROD6; NFIC; NFKB1; NFKB2; NFKBIA; NFKBIZ; NFYA; NOC2L; NPAT; NR0B2; NR4A3; NRL; OLIG3; ONECUT2; ONECUT3; OSR1; OTX1; OVOL1; PAX6; PBRM1; PCBD2; PDLIM1; PHF12; PHOX2A; PHOX2B; PITX2; POU1F1; POU2F1; POU2F2; POU2F3; POU3F1; POU3F2; POU5F2; PPARD; PPARGC1A; PQBP1; PRDM1; PRDM10; PRDM12; PRDM15; PRDM2; PRMT2; PROX2; PRRX1; RAX2; RBL1; RELA; RELB; REPIN1; REST; RFXAP; RHOA; RNF141; RRN3; RSF1; SALL3; SATB2; SCRT1; SHOX2; SIAH2; SIM1; SIRT7; SIX3; SIX4; SIX6; SKIL; SMAD3; SMAD4; SMARCA1; SMARCC1; SNAPC4; SOHLH2; SOX1; SOX13; SOX21; SOX6; SP8; SPZ1; SRCAP; SREBF1; SSX3; STAT2; STAT5A; STAT5B; STAT6; SUFU; TAF1C; TAF1L; TAF4B; TAF6L; TBL1X; TBL1Y; TBX5; TCERG1; TCF21; TCF24; TEAD3; TFAP2A; TFAP2D; TFE3; TGIF1; THAP5; THAP9; TLX2; TLX3; TP53; TRAK1; TRIB3; TRIM22; TSC22D1; TWIST2; UBE2B; UBTF; URI1; USF1; VDR; VGLL2; VGLL4; VHL; WIZ; ZBED4; ZBTB24; ZBTB26; ZBTB32; ZBTB37; ZBTB38; ZBTB42; ZBTB47; ZEB2; ZFHX2; ZFP1; ZFP69B; ZFY; ZIC1; ZIC5; ZMIZ2; ZNF132; ZNF142; ZNF160; ZNF165; ZNF180; ZNF19; ZNF235; ZNF254; ZNF264; ZNF286A; ZNF333; ZNF343; ZNF345; ZNF350; ZNF384; ZNF391; ZNF396; ZNF442; ZNF443; ZNF444; ZNF471; ZNF492; ZNF530; ZNF541; ZNF543; ZNF549; ZNF550; ZNF551; ZNF563; ZNF565; ZNF568; ZNF572; ZNF583; ZNF585B; ZNF597; ZNF605; ZNF611; ZNF620; ZNF621; ZNF625; ZNF627; ZNF646; ZNF671; ZNF682; ZNF688; ZNF697; ZNF71; ZNF749; ZNF765; ZNF771; ZNF800; ZNF808; ZNF836; ZNF852; ZNF90; ZNF99; ZXDB
Down-regulation	285	ADNP; AFF1; AHR; ALX1; AR; ARID1A; ARID2; ARID3B; ARID4A; ASCL3; ATF6B; BACH1; BARX2; BBX; BCL11A; BCL6; BCL6B; BCLAF1; BNC2; BPTF; BRDT; BTF3; C1D; CAPN15; CBX7; CERS5; CREBZF; CREM; CUX2; DACH1; DBP; DLX4; DMRTA2; DMTF1; DYRK1B; E2F8; EBF3; EGR2; EHMT2; ELF3; ELP2; ERBB2; ERF; ETV1; FEZF2; FHL2; FHL5; FOS; FOXC1; FOXI1; FOXJ1; FOXK1; FOXL1; FOXN3; FOXO1; FOXP2; FOXP3; FOXP4; FOXQ1; FUBP1; GATA2; GATA3; GTF2IRD2; HCFC1; HDAC1; HDAC11; HES1; HES7; HESX1; HIC1; HIPK1; HIVEP3; HLF; HLTF; HOXA10; HOXA11; HOXA2; HOXA5; HOXB7; HOXC11; HOXD4; HOXD8; HSF5; ID1; IKBKAP; IKZF4; IL16; ING1; ING4; KAT2B; KAT6B; KAT7; KDM5D; KLF12; KLF15; KMT2A; KMT2B; LCORL; LHX2; LHX6; LHX9; LIN28B; LMCD1; LYL1; MAFB; MAK; MDFI; MECOM; MED27; MEF2D; MIXL1; MLXIPL; MTA3; MZF1; NANOG; NCOA2; NEUROG3; NFATC1; NFIA; NFIB; NFX1; NFYC; NOBOX; NR0B1; NR1I3; NR2C1; NR2F2; NR2F6; NR3C2; NR4A2; NR5A2; NRF1; OTX2; OVOL2; PATZ1; PAX1; PAX8; PBX1; PBX2; PCGF6; PKNOX2; PLAG1; PLAGL1; POLR2A; PPARGC1B; PRDM13; PURA; RBPJL; RERE; RFX2; SALL2; SATB1; SETDB2; SLC2A4RG; SMAD7; SMARCA4; SMARCB1; SNAI1; SOHLH1; SOX12; SOX18; SOX2; SPIC; STAT1; STAT4; SUPT3H; SUZ12; TADA3; TAF10; TAF11; TAF7L; TBL1XR1; TBX1; TBX19; TBX2; TBX20; TCEA2; TCF15; TCF3; TEAD1; TEAD4; TERF2; TFAP2B; TGFB1; TGS1; THAP10; TOX2; TOX3; TRERF1; TRIM33; TSHZ1; TSHZ2; TWIST1; UBE3A; USP21; VAX2; WNT4; WWC1; XRCC6; YY1; ZBTB1; ZBTB12; ZBTB43; ZBTB44; ZBTB45; ZFHX4; ZFP30; ZFP36L1; ZFP37; ZFP41; ZFP90; ZFPM1; ZHX1; ZIC2; ZIK1; ZKSCAN3; ZMIZ1; ZMYND8; ZNF154; ZNF175; ZNF18; ZNF208; ZNF236; ZNF248; ZNF250; ZNF251; ZNF268; ZNF30; ZNF32; ZNF324B; ZNF33B; ZNF382; ZNF397; ZNF408; ZNF431; ZNF439; ZNF44; ZNF441; ZNF449; ZNF461; ZNF485; ZNF490; ZNF500; ZNF517; ZNF519; ZNF521; ZNF529; ZNF544; ZNF546; ZNF547; ZNF554; ZNF570; ZNF575; ZNF585A; ZNF599; ZNF600; ZNF606; ZNF610; ZNF615; ZNF630; ZNF641; ZNF653; ZNF687; ZNF696; ZNF713; ZNF732; ZNF74; ZNF740; ZNF76; ZNF770; ZNF780A; ZNF783; ZNF786; ZNF789; ZNF792; ZNF793; ZNF80; ZNF81; ZNF814; ZNF837; ZNF850; ZNF91; ZNF92; ZSCAN23; ZSCAN30