Transcriptional response

Meta Information :

Response ID	Perturbagen	Data accession	Cell Source	Species	Duration	Concentration	Expression ID
RID04525	Tnfa	GSE9055	Umbilical vein cells	Human	3.5h	10ng/ml	EID4885

Response Information :

Types	Number	Response transcription factors
Up-regulation	269	AFF3; AGO2; ANHX; ARID1A; ARID5A; ARNT; ARNTL2; ATF3; ATF5; ATF6B; ATOH1; BARX1; BASP1; BATF3; BCL11B; BCL9L; BHLHE22; BHLHE40; BHLHE41; BIRC2; BRD2; BRD8; CARHSP1; CCNC; CDYL; CEBPA; CEBPD; CHD2; CIITA; CITED4; CNOT2; CREB3; CREB3L2; CTCFL; DAXX; DLX2; DMRTA1; DR1; E2F1; E2F2; E2F5; EBF2; EGR4; ELK1; ELK4; EMX1; EN2; ENO1; ESRRB; ESRRG; ETS1; ETV7; EYA2; EZH1; FERD3L; FIGLA; FOSB; FOSL1; FOXA2; FOXD3; FOXF1; FOXG1; FOXH1; GABPB1; GCM2; GLI2; GLI4; GMEB1; GRIP1; HDAC5; HDX; HELZ2; HES4; HEY1; HEYL; HIVEP2; HKR1; HMGB2; HNF4A; HOXB1; HOXB13; HOXC12; HOXC13; HOXD10; HOXD9; HR; ID4; IKZF3; ING5; INSM1; INSM2; IRF1; IRF2; IRF5; IRX2; IRX5; ISL1; JAK2; JUNB; KCTD1; KDM1B; KDM5A; KLF14; KLF3; KLF4; KLF6; KLF7; KLF8; KLF9; LEF1; LHX1; LHX4; LHX8; LIN28A; LITAF; MAFG; MDM2; MED26; MEOX1; MIER1; MKX; MNDA; MNT; MSX1; MYBBP1A; MYCL; MYNN; MYOG; NAB2; NCOA7; NCOR2; NEUROG3; NFATC1; NFKB1; NFKB2; NFKBIA; NFKBIZ; NFYA; NHLH2; NPAS2; NR4A1; NR4A3; NRIP1; OLIG2; ONECUT3; OTX1; OVOL1; PATZ1; PAX4; PAX6; PBRM1; PCBD2; PEG3; PHF12; PHF2; PHOX2B; PIAS2; PITX2; POLR2A; POU1F1; POU3F1; POU5F2; PPARD; PPARGC1A; PRDM2; PRDM6; PROX1; PRRX1; RARA; RARG; RAX2; RBPMS; RELA; RELB; REPIN1; RFX3; RFX4; RHOA; RORB; RSF1; SALL3; SATB2; SERTAD2; SIAH2; SIX4; SIX5; SIX6; SMAD3; SMARCC1; SNAPC4; SOHLH2; SOX9; SP140L; SPI1; SRCAP; SSX1; STAT5A; STAT6; SUFU; TADA1; TAF4B; TAF6L; TBL1X; TCEA2; TEAD1; TEAD3; TFAP2C; TFE3; THRA; THRAP3; TRAK1; TRIB3; TWIST2; UBE2B; UBTF; VDR; VGLL4; VHL; VSX1; ZBED4; ZBTB37; ZBTB42; ZBTB7B; ZFP1; ZFP69B; ZFPM2; ZIC1; ZIC4; ZIM3; ZMIZ2; ZNF142; ZNF235; ZNF254; ZNF286A; ZNF296; ZNF334; ZNF343; ZNF366; ZNF384; ZNF416; ZNF429; ZNF484; ZNF530; ZNF543; ZNF550; ZNF578; ZNF584; ZNF586; ZNF597; ZNF605; ZNF621; ZNF625; ZNF646; ZNF671; ZNF683; ZNF697; ZNF705G; ZNF71; ZNF713; ZNF749; ZNF765; ZNF771; ZNF775; ZNF777; ZNF79; ZNF800; ZNF852; ZNF90; ZXDB
Down-regulation	313	ABRA; ACTL6B; AFF1; AHR; ALX1; ALX3; ARID1B; ARID2; ARID4A; ASCL5; ATF2; BARX2; BATF; BBX; BLZF1; BPTF; BRCA1; BRD3; BRD4; BRD7; BRWD1; BTF3; CARF; CBX3; CBX8; CCAR1; CDC5L; CEBPE; CERS6; CHD7; CITED2; CLOCK; CREBZF; DACH1; DBP; DLX4; E2F8; EBF1; EBF3; EED; ELF2; EMX2; EP400; ERBB4; ERF; ESR1; ESR2; ETV1; ETV5; FEZF2; FHL2; FOXA1; FOXC1; FOXK2; FOXN3; FOXO1; FOXO6; FUBP1; GATA2; GATA3; GATA5; GATAD2B; GLIS3; GTF2IRD2; HCFC1; HDAC11; HDAC7; HDAC9; HES1; HIC1; HIPK3; HIRA; HIVEP3; HLTF; HOXA10; HOXA11; HOXA2; HOXA3; HOXA5; HOXA7; HOXC11; HOXD11; HOXD4; HOXD8; ID1; ID2; IKZF1; IKZF4; IL16; INSR; ISX; JARID2; KAT2B; KAT7; KLF15; KMT2A; LCORL; LHX2; LHX6; LMCD1; LYL1; MAFB; MDFI; MECOM; MECP2; MED4; MEF2C; MEIS1; MIXL1; MLLT10; MLX; MLXIP; MLXIPL; MTA3; MYBL1; MYSM1; NEUROD1; NEUROG1; NFATC3; NFIA; NFIB; NFIC; NFX1; NOBOX; NPAS4; NR0B2; NR1H4; NR2F2; NR3C2; ORC2; OSR2; OTP; OTX2; OVOL2; PAX5; PAX8; PAXBP1; PBX2; PBX4; PBXIP1; PCGF3; PCGF6; PEX14; PITX1; PKNOX1; PLAG1; POU3F3; POU4F1; POU4F2; PPARGC1B; PRDM16; RARB; RBL1; RBM14; RCOR2; REL; RFX2; RNF141; RNF6; RUVBL2; RXRG; RYBP; SALL2; SALL4; SATB1; SLC2A4RG; SMAD7; SMARCA4; SMARCB1; SMARCC2; SMARCD3; SOX11; SOX14; SOX15; SOX18; SOX2; SOX3; SOX30; SOX4; SOX6; SPIB; SPIC; STAT4; STAT5B; SUPT3H; SUZ12; TAF1; TAF11; TAF7L; TBX1; TBX21; TERF2; TFAP2B; TFCP2L1; TFEB; TGIF2LY; TGS1; THAP10; THAP11; THAP2; THAP6; TLE1; TOX2; TOX3; TP73; TRERF1; TSC22D1; TSC22D4; TSHZ1; TSHZ2; TSHZ3; TUB; TULP1; TULP2; TWIST1; TXNIP; USF2; VAX2; WNT4; XBP1; YBX1; ZBTB12; ZBTB14; ZBTB18; ZBTB20; ZBTB45; ZFHX3; ZFP14; ZFP3; ZFP36L1; ZGLP1; ZHX3; ZIC2; ZMIZ1; ZNF100; ZNF114; ZNF124; ZNF132; ZNF141; ZNF205; ZNF214; ZNF215; ZNF221; ZNF233; ZNF234; ZNF248; ZNF25; ZNF251; ZNF268; ZNF292; ZNF30; ZNF32; ZNF324B; ZNF350; ZNF354C; ZNF367; ZNF382; ZNF397; ZNF404; ZNF415; ZNF431; ZNF439; ZNF440; ZNF446; ZNF490; ZNF493; ZNF500; ZNF507; ZNF519; ZNF521; ZNF546; ZNF554; ZNF562; ZNF575; ZNF585A; ZNF589; ZNF599; ZNF600; ZNF613; ZNF614; ZNF627; ZNF630; ZNF652; ZNF653; ZNF655; ZNF660; ZNF665; ZNF667; ZNF672; ZNF678; ZNF681; ZNF684; ZNF7; ZNF700; ZNF709; ZNF717; ZNF74; ZNF75D; ZNF782; ZNF789; ZNF792; ZNF793; ZNF8; ZNF813; ZNF827; ZNF831; ZNF837; ZNF844; ZNF891; ZNF92; ZSCAN23; ZSCAN30; ZSCAN5A