Transcriptional response

Meta Information :

Response ID	Perturbagen	Data accession	Cell Source	Species	Duration	Concentration	Expression ID
RID04524	Tnfa	GSE9055	Umbilical vein cells	Human	3.25h	10ng/ml	EID4884

Response Information :

Types	Number	Response transcription factors
Up-regulation	297	ADRB2; AEBP2; AFF3; ALX4; ANHX; ANKRD30A; ARID5A; ARID5B; ARNTL2; ARRB1; ATF3; ATF5; ATN1; ATOH1; BASP1; BATF2; BATF3; BAZ1B; BCL11B; BCL9L; BHLHE22; BHLHE41; BIRC2; BRD8; CBX6; CCNC; CDK2; CDK8; CDYL; CEBPD; CENPF; CHD2; CITED4; CNOT2; CREB3; CTBP2; DACH2; DLX2; DLX5; DMBX1; DMRT3; DOT1L; DR1; E2F2; E2F5; EBF1; EBF2; EGR4; EHF; ELK1; EMX2; EN1; ENO1; EPC1; ESRRB; ESRRG; ETS1; ETV7; EYA1; EZH1; FERD3L; FIGLA; FOXD2; FOXE1; FOXE3; FOXF1; FOXN1; GABPB1; GATA4; GATAD2A; GBX2; GLI2; GLIS1; GRHL3; HBP1; HDAC10; HDX; HELZ2; HES4; HES7; HEY1; HEYL; HIVEP2; HMX2; HNF4A; HNRNPD; HOXB1; HOXC10; HOXC13; HOXC9; HOXD10; HOXD9; ID4; IL31RA; ING5; INSM2; IRF1; IRF2; IRF5; IRF6; IRX3; IRX5; ISL1; JAK2; JUNB; KCNIP3; KCTD1; KDM5A; KLF1; KLF14; KLF4; KLF6; KLF7; KLF9; KMT2A; L3MBTL4; LHX8; LMX1A; MAEL; MAFG; MAPK8IP1; MBD1; MED16; MED30; MEOX1; MESP1; MITF; MKL1; MNDA; MNT; MSX1; MYBBP1A; MYBL1; MYF5; MYOG; MYT1; NAB1; NAB2; NCOA7; NCOR1; NFATC1; NFIX; NFKB1; NFKB2; NFKBIA; NFKBIZ; NR1H2; NR4A3; NR6A1; OLIG3; ONECUT2; ONECUT3; OTX1; OVOL1; PATZ1; PAX4; PAX6; PCBD2; PCGF1; PDLIM1; PHF2; PIAS2; PITX2; POU2F1; POU2F3; POU3F1; POU6F2; PPARA; PRDM10; PRDM12; PRDM2; PRRX1; PRRX2; RELA; RELB; REPIN1; RFX4; RHOA; RNF6; RSF1; SATB2; SERTAD2; SIAH2; SIX5; SKIL; SMAD3; SMARCA1; SMARCC1; SNAPC4; SOX1; SOX6; SOX9; SP140L; SPI1; SRCAP; SSX3; STAT5A; STAT6; SUFU; TAF1C; TAF1L; TAF4B; TAF6L; TBX10; TBX2; TBX20; TBX4; TCEA2; TCF21; TEAD1; TEAD2; TEAD3; TFAP2A; TFE3; TGIF1; THAP3; TLX3; TRAK1; TSC22D1; TULP2; TWIST2; URI1; USP22; VDR; VENTX; VGLL1; VGLL2; VGLL4; VHL; VSX1; WIZ; YBX2; ZBED1; ZBED4; ZBTB26; ZBTB37; ZBTB40; ZBTB42; ZBTB47; ZBTB49; ZFHX2; ZFP69B; ZFPM2; ZIC1; ZIC3; ZIC5; ZMIZ2; ZNF138; ZNF154; ZNF157; ZNF160; ZNF235; ZNF254; ZNF257; ZNF286A; ZNF3; ZNF335; ZNF345; ZNF384; ZNF391; ZNF396; ZNF416; ZNF442; ZNF444; ZNF467; ZNF483; ZNF524; ZNF527; ZNF541; ZNF543; ZNF550; ZNF563; ZNF567; ZNF578; ZNF584; ZNF585B; ZNF586; ZNF620; ZNF625; ZNF646; ZNF664; ZNF683; ZNF697; ZNF71; ZNF749; ZNF770; ZNF771; ZNF800; ZNF829; ZNF836; ZNF852; ZNF90; ZNF99; ZSCAN12; ZSCAN2; ZSCAN4; ZXDB
Down-regulation	336	AFF4; AHR; ALX1; ARID1B; ARID2; ARID4A; ATF2; ATF7IP; ATOH7; BACH1; BARX2; BBX; BCLAF1; BPTF; BRD7; BRDT; BRWD1; BTF3; BTG1; CBX7; CBX8; CCAR1; CCNE1; CDC5L; CEBPE; CECR2; CERS6; CHD9; CREBZF; CSDC2; DACH1; DBP; DTX1; E2F8; EBF3; EED; EGR2; EHMT2; EID1; ELF2; ELF3; ELF5; EP400; ERBB2; ERF; ESR2; ETS2; ETV1; ETV2; FHL2; FHL5; FLI1; FOXB1; FOXC1; FOXL1; FOXL2; FOXN4; FOXO1; FOXO3; FOXP2; FOXP3; FOXP4; FUBP1; GATA2; GATA3; GCM1; GLI3; GON4L; GRHL1; GRHL2; GTF2IRD2; HCFC1; HDAC11; HDAC7; HDAC9; HES1; HIC1; HIC2; HIVEP3; HLTF; HMGA2; HOXA1; HOXA10; HOXA11; HOXA3; HOXA5; HOXA7; HOXC8; HOXD4; HOXD8; HSF5; ID1; ID2; IL16; JARID2; KAT2B; KAT6A; KAT6B; KDM5B; KLF15; KLF17; KMT2B; LCORL; LHX6; LHX9; LMCD1; LYL1; MAFB; MAK; MDFI; MED13; MED17; MEF2C; MEIS1; MGA; MIXL1; MLX; MLXIPL; MSX2; MTA3; MXD3; MYEF2; MYRFL; MZF1; NANOG; NCOA2; NFIA; NFIB; NFX1; NR0B1; NR2F2; NR3C1; NR3C2; NR4A2; NR5A2; ORC2; OTP; PAX2; PAX5; PAX9; PBX4; PHIP; PITX1; PLAG1; PLAGL1; PMS1; PPARGC1B; PRDM13; PRDM15; PRDM16; PRDM5; RBBP4; RBFOX2; RBPJL; REL; RORB; RXRG; SALL4; SAP30; SATB1; SETDB2; SIX1; SMAD6; SMAD7; SMARCA4; SMARCC2; SNAI1; SNAI3; SOHLH2; SOX11; SOX14; SOX18; SOX2; SOX30; SOX4; SOX8; SP2; SP8; SPDEF; SPIB; SPIC; ST18; STAT2; SUB1; SUPT3H; SUZ12; TAF11; TAF5; TAL1; TBL1XR1; TBX1; TBX15; TBX18; TBX21; TBX5; TCERG1; TCF12; TCF7L2; TERF2; TFAP2B; TFAP4; TGFB1; THAP10; THAP2; THAP5; TOB1; TOX2; TOX3; TP73; TRERF1; TRIM29; TRIM33; TRIP11; TRPS1; TSC22D2; TSHZ1; TSHZ3; TULP4; TXNIP; UBE2I; UBE3A; VAX2; XBP1; YBX3; YY1; ZBED6; ZBTB12; ZBTB18; ZBTB20; ZBTB25; ZBTB44; ZBTB45; ZBTB7A; ZBTB7B; ZFP28; ZFP30; ZFP36L1; ZFP64; ZFP69; ZFP90; ZFPM1; ZHX1; ZHX3; ZIC2; ZKSCAN4; ZKSCAN7; ZKSCAN8; ZMYND11; ZMYND8; ZNF10; ZNF101; ZNF124; ZNF135; ZNF17; ZNF182; ZNF205; ZNF224; ZNF225; ZNF230; ZNF233; ZNF234; ZNF236; ZNF248; ZNF25; ZNF250; ZNF253; ZNF287; ZNF30; ZNF311; ZNF354C; ZNF382; ZNF407; ZNF417; ZNF419; ZNF439; ZNF44; ZNF440; ZNF441; ZNF445; ZNF461; ZNF473; ZNF490; ZNF507; ZNF517; ZNF519; ZNF521; ZNF528; ZNF529; ZNF536; ZNF544; ZNF546; ZNF548; ZNF551; ZNF554; ZNF566; ZNF571; ZNF572; ZNF573; ZNF599; ZNF600; ZNF606; ZNF607; ZNF610; ZNF613; ZNF614; ZNF627; ZNF630; ZNF639; ZNF652; ZNF653; ZNF660; ZNF669; ZNF672; ZNF677; ZNF680; ZNF684; ZNF696; ZNF70; ZNF717; ZNF732; ZNF74; ZNF740; ZNF77; ZNF777; ZNF780A; ZNF781; ZNF782; ZNF784; ZNF792; ZNF8; ZNF827; ZNF850; ZNF891; ZNF92; ZSCAN1; ZSCAN23