Transcriptional response

Meta Information :

Response ID	Perturbagen	Data accession	Cell Source	Species	Duration	Concentration	Expression ID
RID04521	Tnfa	GSE9055	Umbilical vein cells	Human	2.5h	10ng/ml	EID4881

Response Information :

Types	Number	Response transcription factors
Up-regulation	315	AEBP2; AJUBA; ALX4; ARID4B; ARID5A; ARNTL2; ASCL2; ATF3; ATF6B; ATOH1; BARX1; BASP1; BATF3; BAZ1B; BCL9L; BCOR; BDP1; BHLHE40; BHLHE41; BIRC2; BRD4; BRD8; CBX2; CD3D; CDK9; CDYL; CEBPD; CECR2; CENPF; CHD2; CHD6; CITED4; CNOT2; CREB3; CREB3L2; CRTC1; CTCFL; DLX1; DLX6; DMBX1; DMRT1; DMRTA1; DNAJC2; DR1; E2F2; E2F5; EBF2; EHF; ELK1; EMX1; EPC1; ESRRB; ESRRG; ETS1; ETV7; EZH1; FHL5; FIGLA; FIZ1; FOXD1; FOXD2; FOXD3; FOXF1; FOXG1; FOXI1; FOXK1; FOXN1; FOXO4; FOXR1; FOXR2; GABPB1; GATA4; GATAD2A; GBX2; GLI2; GLIS1; GMEB1; GRIP1; GTF2A1; GTF2A1L; HABP4; HAND2; HBP1; HDAC11; HELZ2; HES5; HEY1; HEY2; HEYL; HIVEP1; HIVEP2; HKR1; HMX2; HNF4A; HNRNPD; HOXC10; HOXC12; HOXC9; HOXD1; HOXD10; HR; ID4; IKZF1; IKZF3; ING5; INSM1; IRF1; IRF2; IRF5; IRX2; IRX5; ISL2; JUNB; KCTD1; KDM1B; KDM5A; KLF14; KLF3; KLF6; KLF9; L3MBTL4; LBX1; LEF1; LHX1; LHX8; LIN28A; LITAF; LMO1; LZTS1; MAEL; MAFF; MAPK8IP1; MBD1; MEOX1; MKL1; MKX; MNT; MNX1; MSX1; MSX2; MTA2; MXD1; MYCL; MYNN; MYOG; MYRF; MYT1; NAB2; NCOA7; NCOR1; NEUROD4; NFATC1; NFATC2; NFKB1; NFKB2; NFKBIA; NFKBIZ; NFYA; NPAS2; NPAT; NR1H4; NR4A1; NR4A3; NR6A1; NRIP1; NRL; OLIG1; ONECUT2; ONECUT3; OSR2; OTX1; PATZ1; PAX1; PAX4; PBRM1; PBXIP1; PCBD2; PGR; PHF12; PHOX2B; POU3F1; POU5F2; PRDM14; PRDM2; PROX1; PROX2; PRRX1; PYGO2; RARG; RAX2; RBL1; RELB; REPIN1; RFX3; RFXAP; RNF141; RORC; RREB1; RSF1; RXRB; SALL3; SERTAD2; SIX3; SIX4; SKIL; SMAD3; SMAD4; SMAD6; SMYD1; SNAPC4; SOX11; SOX13; SOX6; SP140L; SP8; ST18; STAT5A; STAT6; SUFU; TADA1; TADA2A; TAF1L; TAF4B; TAF7L; TAL2; TBL1Y; TBR1; TCEA2; TEAD1; TEAD3; TFAP2A; TFAP2C; TFDP2; TFE3; THRA; THRB; TRIB3; TRIM11; TWIST2; UBE2B; UBTF; USP22; VDR; VHL; YBX2; ZBED2; ZBED4; ZBTB24; ZBTB26; ZBTB37; ZBTB40; ZBTB47; ZBTB7C; ZEB2; ZFP1; ZFP42; ZFP57; ZFP69B; ZFY; ZIC1; ZIC4; ZIC5; ZKSCAN3; ZMIZ2; ZMYM2; ZNF17; ZNF214; ZNF235; ZNF254; ZNF286A; ZNF3; ZNF334; ZNF335; ZNF343; ZNF345; ZNF350; ZNF362; ZNF396; ZNF407; ZNF416; ZNF425; ZNF443; ZNF444; ZNF470; ZNF549; ZNF550; ZNF560; ZNF563; ZNF567; ZNF572; ZNF578; ZNF611; ZNF620; ZNF625; ZNF646; ZNF664; ZNF668; ZNF671; ZNF682; ZNF683; ZNF688; ZNF697; ZNF71; ZNF749; ZNF770; ZNF79; ZNF800; ZNF852; ZNF853; ZNF865; ZNF90; ZSCAN10; ZSCAN2; ZXDB; ZXDC
Down-regulation	297	AFF3; AFF4; ALX1; ALX3; ANHX; ARID4A; ASCL5; ATF7; BACH1; BANP; BARHL1; BATF; BBX; BCL11A; BLZF1; CAPN15; CARF; CBX7; CBX8; CERS5; CERS6; CHAF1B; CTBP1; CUX1; DCC; DLX4; DMRT3; DTX1; DYRK1B; E2F8; EBF3; EHMT2; ELF3; EMX2; ERF; ETV5; FHL2; FOXA1; FOXA3; FOXB1; FOXC1; FOXK2; FOXL2; FOXN4; FOXO3; FOXO6; FOXP3; FOXP4; FOXQ1; FUBP1; GATA2; GATA3; GATA5; GCM1; GFI1; GSC2; GSX1; GTF2IRD2; HCFC1; HDAC6; HDAC9; HES1; HIC1; HIPK1; HIVEP3; HLF; HLTF; HMGB2; HOXA1; HOXA10; HOXA11; HOXA5; HOXA6; HOXA7; HOXB6; HOXB7; HOXC11; HOXC6; HOXD4; HOXD8; ID1; IKZF4; ING3; INSR; IRF4; JAK2; JARID2; KAT7; KDM5B; KDM5D; KLF15; KLF17; KLF2; KMT2B; KMT2C; LCORL; LHX4; LHX6; LHX9; LMCD1; LYL1; MAFB; MBD3; MECOM; MECP2; MED16; MED25; MED27; MLXIP; MLXIPL; MXD3; MYBL2; MYF6; NCOA2; NCOR2; NEUROG1; NFATC3; NFIC; NFRKB; NFX1; NHLH1; NOBOX; NR0B1; NR2F6; NR3C2; NR5A2; ONECUT1; OTX2; OVOL2; PAX2; PAX3; PAX9; PAXBP1; PEX2; PHIP; PLAG1; PML; POU5F1B; POU6F1; PPARG; PRDM15; PRDM16; PROP1; RARB; RB1; RBPJL; RCOR3; REST; RFX2; RORB; RXRG; SALL2; SALL4; SCAI; SLC2A4RG; SMAD2; SMAD7; SMAD9; SMARCA2; SMARCA4; SMARCB1; SNAI2; SOX12; SOX14; SOX15; SOX18; SOX2; SOX3; SPIB; SPIC; STAT2; SUZ12; TAF1; TAF10; TAF11; TBX1; TBX19; TBX20; TBX22; TCERG1; TCF7; TDRD3; TFAP2B; TFCP2L1; TGS1; THAP10; THAP2; THAP5; TONSL; TOX2; TP63; TP73; TRERF1; TRIM29; TSC22D1; TSHZ1; TTF2; TULP1; TXNIP; UBE3A; USP21; VAX2; WNT4; XBP1; YBX3; ZBED6; ZBTB14; ZBTB18; ZBTB38; ZBTB44; ZBTB45; ZFP14; ZFP36L1; ZIC2; ZKSCAN4; ZKSCAN7; ZMIZ1; ZNF10; ZNF100; ZNF148; ZNF160; ZNF169; ZNF174; ZNF175; ZNF184; ZNF205; ZNF219; ZNF224; ZNF225; ZNF23; ZNF233; ZNF248; ZNF268; ZNF287; ZNF30; ZNF311; ZNF34; ZNF347; ZNF354C; ZNF397; ZNF408; ZNF41; ZNF415; ZNF417; ZNF439; ZNF44; ZNF440; ZNF467; ZNF473; ZNF521; ZNF530; ZNF536; ZNF546; ZNF554; ZNF562; ZNF575; ZNF580; ZNF585A; ZNF599; ZNF606; ZNF607; ZNF614; ZNF626; ZNF627; ZNF630; ZNF639; ZNF652; ZNF660; ZNF662; ZNF667; ZNF672; ZNF680; ZNF681; ZNF687; ZNF696; ZNF705G; ZNF709; ZNF717; ZNF732; ZNF74; ZNF740; ZNF76; ZNF777; ZNF780B; ZNF781; ZNF782; ZNF784; ZNF789; ZNF792; ZNF8; ZNF814; ZNF844; ZNF85; ZNF850; ZNF891; ZNF92; ZSCAN20