Transcriptional response

Response ID Perturbagen Data accession Cell Source Species Duration Concentration Expression ID
RID04519 Tnfa GSE9055 Umbilical vein cells Human 2h 10ng/ml EID4879
Types Number Response transcription factors
Up-regulation 275 ALX4; ANHX; ARID3A; ARNT; ARNTL2; ARRB1; ASCL1; ATF3; ATN1; ATOH1; BARX1; BASP1; BATF3; BAZ1B; BCOR; BHLHE22; BHLHE40; BHLHE41; BIRC2; BRD8; CARHSP1; CBX2; CCNC; CD3D; CDK2; CDK9; CDYL; CEBPD; CENPF; CERS4; CERS5; CHD2; CHD7; CIITA; CITED1; CITED4; CREB3L2; CREB3L3; CRTC1; CTCFL; DEAF1; DLX2; DMRT1; DMRT2; DMRTA1; DOT1L; DR1; E2F2; E2F5; EGR4; ELK1; EN2; ENO1; EPC1; ESRRG; ETS1; ETV7; FERD3L; FOSL1; FOXC2; FOXD2; FOXD3; FOXE1; FOXF1; FOXN1; FOXO4; FOXR2; GABPB1; GATA4; GATAD2A; GBX2; GLI1; GMEB1; GTF2A1L; HABP4; HDX; HELZ2; HEY1; HEYL; HIPK2; HIVEP1; HIVEP2; HKR1; HMGB2; HMX2; HNRNPD; HOXB1; HOXB3; HOXB8; HOXC12; HOXC9; HOXD10; ID4; ING2; ING5; INSM2; IRF1; IRF2; IRF5; IRF8; IRX2; IRX3; IRX5; JUNB; KCTD1; KDM5A; KLF14; KLF3; KLF5; KLF6; KLF7; KLF9; L3MBTL4; LHX1; LIMD1; LITAF; LZTS1; MAEL; MAFG; MBD1; MEOX1; MESP1; MITF; MKX; MNDA; MNT; MSX1; MTA2; MYT1; NAB2; NCOA7; NFATC1; NFATC2; NFKB1; NFKB2; NFKBIA; NFKBIZ; NOC2L; NPAT; NR4A1; NR4A3; ONECUT3; OSR2; OTX1; OVOL1; PAX1; PAX4; PAX6; PBRM1; PBXIP1; PCBD2; PDX1; PHF12; PIAS2; POU1F1; POU2F2; POU4F1; POU5F2; PRDM10; PRDM14; PRDM2; PROX2; RARG; RAX2; RELB; REPIN1; RHOA; RUNX3; SALL3; SERTAD2; SIM2; SIX4; SIX6; SMAD3; SMAD4; SNAPC4; SOX10; SOX13; SOX7; SOX9; SP140L; SRCAP; SSX1; STAT5A; STAT5B; SUV39H2; TADA1; TADA2A; TADA3; TAF1C; TAF1L; TAF4B; TAL2; TBX10; TCEA1; TCEA2; TCF3; TEAD3; TFDP2; TFE3; THAP3; THRB; TLX3; TRAK1; TSHZ2; TWIST2; UBE2B; UBTF; URI1; VDR; VGLL2; VHL; VSX1; WIZ; WT1; YBX2; ZBTB24; ZBTB37; ZBTB40; ZBTB42; ZBTB47; ZBTB7B; ZFP1; ZFP36L2; ZFP69B; ZFY; ZIC1; ZMYM2; ZNF107; ZNF19; ZNF235; ZNF254; ZNF257; ZNF264; ZNF286A; ZNF292; ZNF324; ZNF334; ZNF335; ZNF345; ZNF383; ZNF384; ZNF407; ZNF416; ZNF443; ZNF446; ZNF484; ZNF524; ZNF550; ZNF557; ZNF563; ZNF567; ZNF578; ZNF583; ZNF584; ZNF597; ZNF621; ZNF625; ZNF671; ZNF674; ZNF688; ZNF697; ZNF71; ZNF749; ZNF765; ZNF79; ZNF808; ZNF836; ZNF852; ZNF90; ZNF99; ZSCAN20; ZXDA; ZXDB; ZXDC
Down-regulation 308 ABRA; AEBP2; AFF1; ALX1; ARID1B; ARID4A; ASCL5; BARHL1; BARX2; BBX; BCL11A; BCL6B; BRWD1; CAPN15; CARF; CBFA2T2; CBFA2T3; CBX7; CCNE1; CERS3; CREBZF; DACH2; DMRTC2; EBF3; EED; EGR2; ELF2; ELF3; ELK4; ELP2; EMX2; ESR1; ESR2; ESX1; ETV1; EYA3; FEZF2; FHL5; FLI1; FOXA1; FOXA3; FOXB1; FOXC1; FOXD1; FOXJ1; FOXN3; FOXN4; FOXO3; FOXP2; FOXP4; FUBP1; GATA1; GATA2; GATA3; GATA5; GCM1; GFI1; GLIS3; GSX1; GSX2; GTF2IRD2; GZF1; HCFC1; HDAC11; HDAC4; HDAC7; HDAC9; HES1; HES5; HES6; HIC1; HIF3A; HIPK1; HIRA; HLF; HMGA2; HNF1A; HOXA1; HOXA10; HOXA11; HOXA2; HOXA5; HOXA7; HOXC10; HOXD11; HR; ID1; ID2; IKZF4; ING1; IRX1; JARID2; JMY; KAT6A; KDM5B; KLF15; KLF16; KMT2A; KMT2C; LCORL; LHX2; LIN54; LMCD1; LYL1; MDFI; MED12; MED14; MEIS3; MLLT10; MLX; MLXIP; MXD3; MYF6; MYT1L; NAB1; NANOG; NCOA6; NFIB; NFIC; NFX1; NPAS4; NR1I3; NR2C1; NRF1; ONECUT1; ORC2; OTP; OVOL2; PAX5; PAX7; PAX8; PAXBP1; PBX4; PCGF6; PHIP; PITX1; PLAG1; PML; PMS1; POLR2A; PPARG; PPARGC1B; PRDM13; RCOR2; RFX2; RNF141; RNF6; RORA; RORB; RSF1; RUNX2; SATB1; SCAI; SIM1; SIN3A; SIX1; SIX2; SMAD6; SMAD7; SMAD9; SMARCA2; SMARCB1; SMYD1; SNAI1; SOX11; SOX14; SOX18; SOX2; SOX21; SOX3; SOX30; SOX5; SOX6; SP1; SP110; SP4; SP8; SPIB; SPIC; SREBF1; SUZ12; TAF11; TAF1A; TAF7L; TAL1; TBX1; TBX20; TBX21; TBX22; TCEB2; TCF15; TCF7; TEF; TERF2; TFAP4; TFEB; TGFB1; THAP10; THAP11; THAP5; TONSL; TOX3; TRERF1; TRIM11; TRPS1; TSC22D3; TSC22D4; TSHZ1; TUB; TXNIP; UBE3A; USF1; WNT4; XRCC6; YBX1; YBX3; YY1; ZBED4; ZBED6; ZBTB12; ZBTB18; ZBTB25; ZBTB45; ZFP3; ZFP36L1; ZFP90; ZFPM1; ZGLP1; ZHX3; ZIC2; ZIC3; ZKSCAN5; ZMYND8; ZNF135; ZNF14; ZNF157; ZNF180; ZNF208; ZNF215; ZNF219; ZNF224; ZNF234; ZNF236; ZNF248; ZNF268; ZNF283; ZNF30; ZNF324B; ZNF333; ZNF354C; ZNF398; ZNF408; ZNF415; ZNF417; ZNF439; ZNF44; ZNF461; ZNF467; ZNF473; ZNF486; ZNF500; ZNF507; ZNF521; ZNF536; ZNF554; ZNF562; ZNF573; ZNF577; ZNF594; ZNF595; ZNF596; ZNF599; ZNF613; ZNF614; ZNF626; ZNF627; ZNF641; ZNF652; ZNF653; ZNF672; ZNF680; ZNF7; ZNF700; ZNF710; ZNF713; ZNF717; ZNF763; ZNF77; ZNF770; ZNF780B; ZNF781; ZNF782; ZNF783; ZNF784; ZNF789; ZNF792; ZNF793; ZNF8; ZNF81; ZNF814; ZNF827; ZNF837; ZNF85; ZNF850; ZNF92; ZSCAN1; ZSCAN12; ZSCAN2