Transcriptional response

Response ID Perturbagen Data accession Cell Source Species Duration Concentration Expression ID
RID04517 Tnfa GSE9055 Umbilical vein cells Human 1.5h 10ng/ml EID4877
Types Number Response transcription factors
Up-regulation 282 AEBP2; AIRE; AJUBA; ALX4; ARHGAP35; ARID1A; ARNTL2; ATF3; ATF5; ATF6B; ATOH1; BARX1; BASP1; BATF2; BCL11B; BCL9L; BCOR; BHLHE22; BHLHE40; BHLHE41; BIRC2; BRD4; BRD8; CCNC; CDK2; CDX4; CEBPD; CHD2; CITED4; CREB3L2; CRYM; DAXX; DMRT2; DMRTB1; DNAJC2; DOT1L; DR1; E2F1; E2F2; E2F5; EBF2; EGR4; EHF; ELK1; EN2; ENO1; EPC1; ESRRG; ESX1; ETS1; EZH1; FERD3L; FIGLA; FOSB; FOSL1; FOXA2; FOXA3; FOXC2; FOXD1; FOXD3; FOXF1; FOXO4; FOXR2; GABPB1; GATA4; GATAD2A; GBX2; GCM2; GLI2; GRHL2; GTF2A1L; HABP4; HBP1; HDX; HELZ2; HES5; HEY1; HEYL; HIPK2; HIVEP1; HIVEP2; HMGB2; HMX2; HNF4A; HOXA13; HOXB1; HOXB3; HOXC12; HOXC5; HOXC8; HOXC9; HOXD10; HOXD9; ING5; INSM1; INSM2; IRF1; IRF5; IRX5; ISL1; ISL2; JAK2; JUNB; JUND; KCTD1; KLF14; KLF3; KLF5; KLF6; KLF7; KLF9; LEF1; LHX4; LHX8; LIMD1; LIN28A; LIN28B; LITAF; LMX1B; LZTS1; MAEL; MAFF; MBD1; MEF2C; MEOX1; MESP1; MKL1; MNDA; MNT; MSX1; MYCL; MYCN; MYF5; MYF6; MYRF; MYT1; NAB1; NAB2; NCOA7; NCOR1; NFATC1; NFE2; NFKB1; NFKB2; NFKBIA; NFKBIZ; NPAT; NR4A1; NR4A3; NR6A1; NRL; ONECUT2; ONECUT3; OTX1; OVOL1; PATZ1; PAX4; PBRM1; PCBD2; PDX1; PHF1; PHF2; PITX2; POU2F2; POU4F1; POU4F3; POU5F2; PRDM10; PRDM14; PRDM7; PRDM9; PRKDC; PROX1; RARG; RAX2; RBPMS; RELB; REPIN1; RSF1; RYBP; SALL1; SALL3; SATB2; SERTAD2; SF1; SIM2; SIX4; SKIL; SMAD3; SMARCB1; SMARCC1; SOX1; SOX13; SOX21; SOX7; SOX9; SP140L; SRCAP; SSX3; SUFU; TAF4B; TBL1X; TCEA1; TCEA2; TCF21; TCF3; TEAD3; TFAP2A; TFE3; THAP3; THAP9; TRIB3; URI1; VDR; VGLL1; VGLL2; VHL; ZBED2; ZBED4; ZBTB24; ZBTB26; ZBTB37; ZBTB40; ZBTB42; ZBTB47; ZEB2; ZFHX2; ZFP1; ZFP36L2; ZFP69B; ZFY; ZIC4; ZIC5; ZIM3; ZMIZ2; ZMYM2; ZNF157; ZNF165; ZNF214; ZNF235; ZNF254; ZNF292; ZNF3; ZNF334; ZNF335; ZNF345; ZNF384; ZNF391; ZNF396; ZNF416; ZNF425; ZNF443; ZNF444; ZNF471; ZNF524; ZNF527; ZNF540; ZNF550; ZNF563; ZNF567; ZNF584; ZNF620; ZNF621; ZNF625; ZNF668; ZNF671; ZNF688; ZNF697; ZNF71; ZNF79; ZNF80; ZNF800; ZNF808; ZNF829; ZNF831; ZNF836; ZNF90; ZSCAN10; ZSCAN20; ZXDA; ZXDB; ZXDC
Down-regulation 270 AFF3; ALX1; ALX3; ARID1B; ARID4A; ARX; ASCL3; ASCL5; ATOH7; BARX2; BBX; BCL11A; BCL6B; BCLAF1; BLZF1; BRD3; BTF3; CAMTA1; CAPN15; CASZ1; CBL; CHD7; CLOCK; CSDC2; DACH2; DEAF1; DLX4; DTX1; EGR2; ELP2; EMX2; EP400; ERBB4; ERF; ESR1; ESR2; ESRRA; ETV4; FEZF2; FHL5; FIZ1; FOS; FOXA1; FOXB1; FOXC1; FOXJ2; FOXL1; FOXL2; FOXO1; FOXO3; GATA1; GATA3; GATA5; GLIS1; GSX1; GTF2A1; GTF2IRD2; HCFC1; HDAC9; HES1; HES6; HIC1; HIC2; HIF3A; HLF; HNF1A; HNF4G; HNRNPD; HOXA1; HOXA10; HOXA11; HOXA2; HOXA4; HOXA5; HOXD11; ID1; IL16; ING1; ING3; IRX1; ISX; KDM5B; KDM5D; KLF16; KLF2; KMT2A; KMT2C; L3MBTL1; LCORL; LHX2; LYL1; MAFG; MDM2; MED12; MED14; MED27; MEIS3; MKL2; MLX; MLXIPL; MNX1; MXD3; MYB; MYT1L; NANOG; NCOA6; NFATC2; NFATC3; NFIB; NPAS4; OTP; OTX2; PAX2; PAX5; PAX8; PITX1; PKNOX1; PLAG1; PML; PMS1; POLR2A; POU3F2; POU3F3; POU5F1B; PPARGC1A; PPARGC1B; PRDM16; PURB; RFX2; RNF6; RORA; RORB; SAFB2; SALL4; SATB1; SCAI; SIN3A; SIRT2; SIX1; SIX2; SMAD7; SMAD9; SMARCC2; SMYD1; SNAI1; SOHLH2; SOX10; SOX11; SOX14; SOX18; SOX2; SOX30; SOX5; SOX6; SP110; SP2; SUB1; SUV39H2; SUZ12; TADA3; TAF11; TAF7L; TBL1XR1; TBX15; TBX18; TBX5; TCF15; TCF20; TEF; TERF2; TFEB; TGFB1; TGS1; THAP10; THAP11; TMF1; TONSL; TOX; TOX3; TP63; TRIM29; TRIM33; TSC22D1; TSC22D4; TSHZ1; TUB; TWIST1; TXNIP; UBE3A; VAX2; YBX1; YY1; ZBED6; ZBTB20; ZBTB3; ZBTB44; ZBTB48; ZFP14; ZFP2; ZFP30; ZFPM1; ZIC2; ZIK1; ZKSCAN1; ZMYND8; ZNF100; ZNF14; ZNF154; ZNF169; ZNF174; ZNF19; ZNF197; ZNF208; ZNF215; ZNF219; ZNF226; ZNF248; ZNF25; ZNF250; ZNF287; ZNF30; ZNF33B; ZNF354C; ZNF382; ZNF420; ZNF431; ZNF439; ZNF440; ZNF446; ZNF461; ZNF467; ZNF473; ZNF493; ZNF519; ZNF546; ZNF555; ZNF562; ZNF568; ZNF575; ZNF594; ZNF595; ZNF599; ZNF607; ZNF613; ZNF614; ZNF626; ZNF639; ZNF655; ZNF672; ZNF680; ZNF682; ZNF696; ZNF70; ZNF711; ZNF732; ZNF736; ZNF74; ZNF77; ZNF777; ZNF780B; ZNF781; ZNF783; ZNF792; ZNF793; ZNF8; ZNF814; ZNF837; ZNF85; ZNF850; ZNF92