Transcriptional response

Response ID Perturbagen Data accession Cell Source Species Duration Concentration Expression ID
RID00523 Doxycycline GSE130381 ESCs Human 72h 1ug/ml EID1018
Types Number Response transcription factors
Up-regulation 334 HOXB7; HOXB9; HOXA2; MYOD1; HOXA1; CDX2; HOXB5; HOXB2; HOXA5; HOXD1; SOX14; ZIC4; HOXB3; HOXB8; TBX4; SALL3; HOXA3; HOXA6; ID3; HOXD3; E2F7; HOXB4; ZNF521; NEUROG2; HOXB6; EVX1; CBFA2T3; MSGN1; ZFP36L2; MYCN; ZFPM2; ZNF831; MNX1; HOXA4; SP8; CITED2; HIPK2; E2F2; ZIC1; VEZF1; NSD2; RXRG; GATA6; MESP1; THRA; RFX6; HOXD4; GLI3; CHD3; NR6A1; VGLL2; HOXC8; ZFP36L1; ASXL1; ZBTB16; FOXF1; ZNF436; PROX1; ZFHX3; LMX1A; CDX1; ALX4; ZNF441; PAX2; MYCL; ZNF319; VGLL4; CTNNB1; ZNF641; ATOH8; ZEB2; ZNF367; SP6; PPARG; SALL1; ZBTB7C; HMGA2; ZNF423; TWIST1; HAND1; SMAD3; E2F1; TSHZ1; TEAD1; ZNF567; JDP2; ZNF70; PAX3; ZNF283; BHLHE22; ESX1; FOXD4L5; SP9; ZNF235; GATA3; ZNF286B; SOX11; EBF1; TBX6; IFI16; SMAD9; WNT3A; FOXB1; RFX4; HOXC4; PLAGL2; ELF1; ZNF716; NCOA6; HES7; CDX4; OSR1; DLX1; SOX8; PAX4; ARID3C; ASCL1; SIX6; TFDP3; ZSCAN4; TBX5; HOXC5; DLX6; IRX1; TCF4; DACH1; POU3F2; MEIS1; IRX3; GBX2; ARID5B; WTIP; NRIP1; GLIS3; TFAP4; ZNF683; MAML3; EOMES; PAX7; MSX1; HIVEP3; ZFP28; MNT; TCF7; PRRX1; SP5; ATF3; CREB3L3; CENPB; ZNF800; FOXL1; ZNF653; PURA; FOXG1; DMRT1; ZNF497; TBX3; ZNF135; ZIM3; SETD7; ZNF76; CEBPE; ZNF837; HOXB1; EBF3; FOXK1; TLE4; ZNF214; LEF1; MEIS2; ARID1A; ARID5A; ONECUT2; ZNF853; MXD3; MXD4; BMI1; ZMIZ1; HOXA10; KDM5D; PLAGL1; NFIX; MAEL; MIXL1; ZNF664; HOXA7; ZBTB42; KCNIP3; SMAD1; ZNF443; GATA4; MSX2; IKZF2; FOXC1; PKNOX2; ZNF658; MAF; ZNF117; TFAP2A; OLIG3; OSR2; LHX2; MLLT6; ZNF200; SOX13; ZBTB47; ZNF124; SMARCD3; HOXD13; HOXC6; ZNF584; SNAI1; GCM1; ZNF80; BACH2; POU5F2; AFF3; ZBTB32; HOXD8; ZNF740; PITX1; TBX20; LZTS1; ZNF763; ZNF234; IRF8; ADRB2; ZNF396; EMX2; GATA2; MYOCD; SRCAP; PRRX2; PBX4; SMAD7; ZNF583; HNF1A; ZNF568; ZEB1; POU2AF1; GATA5; CITED1; NFIC; TCF23; SNAPC4; MLXIP; CALCOCO1; SMAD6; TBX15; SIM1; IRX5; ZFHX4; NFIA; ZNF180; ZGLP1; YAF2; ZNF780B; GSC; GLIS1; RUNX3; NHLH1; TBX10; CAMTA2; PITX2; CBFB; ZNF565; CBX8; ZNF781; FOXD1; ARID4A; ANKRD1; SOX7; MECOM; ZNF208; ZNF467; FOXL2; ZNF17; ZNF540; ARNT2; SATB2; ZSCAN16; ZHX3; HR; ZNF528; ZNF774; ZNF709; NR0B1; DMRTA2; MEOX1; HSFX1; ZNF471; ZNF284; ZNF491; ZNF628; EGR3; LBX2; SHOX2; TBX2; PGR; SNIP1; BRDT; ZNF248; HIC1; ABRA; HOXB13; IL16; SKOR1; FOXF2; PTF1A; ZBED2; RHOXF2; TLX2; ISL1; ZNF469; ZBED1; PRDM1; NEUROD1; EBF2; SOX6; SOX5; RFX8; HLX; MAK; PAX5; HIVEP2; ZBED6; SP7; AR; STAT4; ZNF98; ESR2; RUNX2; PAX9; HNF4G
Down-regulation 194 DNMT3B; SKIL; NOTO; TCF7L2; UTF1; FOXO1; TXNIP; SOX21; TP73; SALL2; KDM4A; POU3F4; NANOG; AATF; ELF3; ATF5; TERF1; TFAP2C; ZNF217; KLF9; ZBED3; MTA3; IRF6; POU5F1; MYB; ZFP42; NPAS1; TFE3; NFE2L3; ZNF770; NR3C1; CDK7; IRX2; JUN; ETS1; TOX; BCL6; CEBPZ; BCOR; HEY2; MYC; SOX4; KDM4C; OTX2; PIR; AES; SAP18; SOX2; PAWR; TRIM24; TRERF1; ZNF398; LMCD1; ZNF512B; ACTL6B; ZNF34; ZNF165; MED14; ASCL2; ETS2; TOX3; ZNF721; OTX1; SHOX; TRIM22; PRDM14; ZNF296; ZSCAN10; OVOL1; GRHL2; OLIG1; HTATIP2; TCF7L1; HDAC9; IRF4; PTRF; OLIG2; ONECUT1; MAFB; KDM5B; CCNC; FOXD3; FOXN2; TFEB; IRF9; SNAI3; LMO1; FEZF1; SKOR2; ZNF425; GLI1; ZNF860; NFKB2; NR3C2; ZNF488; ZNF75D; JAZF1; FHL2; TFCP2L1; ZNF114; NOCT; TLE2; HHEX; BHLHE40; PBX3; MLXIPL; RELB; GRHL3; RORB; TOB1; MAPK8IP1; HES3; BATF2; FOSB; RAX; EMX1; MYRFL; FOXJ1; MYT1L; HES2; BARHL2; ETV3L; VSX2; ZNF775; LHX6; THRB; NHLH2; WNT4; SIX2; CRYM; BNC2; ZBTB3; CREB3L1; POU3F1; OVOL2; RIPK3; BCL11A; SOX10; HSF4; ZFP57; TCF24; PPARGC1A; ZNF878; ISL2; ZBTB7B; ARX; VDR; BHLHE41; GRHL1; MKX; HMX2; MXD1; STAT5A; CEBPD; ETV7; KLF4; MEF2B; ESRRB; FOSL1; CRX; AHR; ZNF575; CREB5; POU2F3; PRDM16; ZFHX2; NR1I2; FLI1; TAL1; MSC; MEF2C; BATF3; SPIB; MED17; NEUROD2; RUNX1; TAF7L; GFI1; ALX3; MEOX2; BHLHE23; BHMG1; RHOXF1; SSX4B; NR4A3; IRX6; LHX8; TPRX2P; ZNF812P; SMYD1; ZSCAN1; DLX4; PRDM9; FOXO6