Transcriptional response

Response ID Perturbagen Data accession Cell Source Species Duration Concentration Expression ID
RID00492 Retinoic acid E-TABM-903 ESCs Mouse 24h 12nM EID0989
Types Number Response transcription factors
Up-regulation 88 HOXA5; SIX6; MEIS1; RARB; OLIG3; MAFB; PHOX2B; TSHZ1; PAX3; SOX13; ZIC1; HOXB5; SOX1; TFAP2B; SOX3; ID2; HOXC8; HOXA1; CDX1; HOXA3; HOXA2; GLI3; MEOX1; RFX4; HOXB9; VEZF1; ZNF521; SOX2; AFF3; SOX21; TSHZ3; IRX2; MEIS2; GBX2; ZNF467; IRX3; MECOM; HOXC4; SALL2; PAX6; HOXA9; HOXB8; HOXB2; HOXB6; ZNF618; NR2F1; HOXC5; ELK3; LHX5; FOXB1; HOXB4; HOXB1; PRRX2; PLAGL1; HOXB3; HOXA4; NR2F2; GLI2; CDX4; NRIP1; EBF1; ZEB2; ZNF423; HOXD4; ALX1; TXNIP; NKX6-1; BNC2; HOXC9; MNX1; ZFHX4; NKX1-2; HOXD1; TAL1; HOXD8; TAF9B; POU3F1; ZMIZ1; POU4F1; TSHZ2; FOXP2; ZBTB16; IKZF2; FOSL2; ALX3; HOXD9; TFAP2A; IRX1
Down-regulation 38 SALL3; MESP2; MESP1; BCL11A; GATA4; EOMES; BCL11B; SP5; LEF1; EVX1; SNAI1; MIXL1; DNMT3B; POU5F1; ISL1; LHX1; GATA6; OTX2; ZFPM1; MSGN1; HEY1; PRDM6; FOXF1; TBX6; KLF9; LMO1; SIX2; MSX2; TGFB1; DMRTA1; TWIST1; FOXC1; PRDM14; TBX20; SMAD6; TBX3; HAND2; FOXC2